Aug 11 17:54:19.948 INFO checking chemfiles-sys-0.5.0 against master#f6d43ed84207c7e58f363f46e5a438ff40f2b311 for libc-1
Aug 11 17:54:19.948 INFO running: cargo +f6d43ed84207c7e58f363f46e5a438ff40f2b311-alt check --frozen --all --all-targets
Aug 11 17:54:19.948 INFO creating container for: cargo +f6d43ed84207c7e58f363f46e5a438ff40f2b311-alt check --frozen --all --all-targets
Aug 11 17:54:19.948 INFO running `"docker" "create" "-v" "/tmp/crater.ejxJQp9ynL90:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/libc-1/worker-3/master#f6d43ed84207c7e58f363f46e5a438ff40f2b311:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home/git:/cargo-home/git:rw,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +f6d43ed84207c7e58f363f46e5a438ff40f2b311-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "crater"`
Aug 11 17:54:20.112 INFO blam! 934cec7397ddedc6fcb0136e6b89a47ce1558a01d6a121785d0e74137b29030a
Aug 11 17:54:20.115 INFO running `"docker" "start" "-a" "934cec7397ddedc6fcb0136e6b89a47ce1558a01d6a121785d0e74137b29030a"`
Aug 11 17:54:20.932 INFO kablam!    Compiling chemfiles-sys v0.5.0 (file:///source)
Aug 11 17:54:27.867 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.5.0 (file:///source)`
Aug 11 17:54:27.867 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-16feca12b5ccc435/build-script-build` (exit code: 101)
Aug 11 17:54:27.867 INFO kablam! --- stdout
Aug 11 17:54:27.867 INFO kablam! CMake project was already configured. Skipping configuration step.
Aug 11 17:54:27.867 INFO kablam! running: "cmake" "/source/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-1287f83ca0d4e800/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
Aug 11 17:54:27.867 INFO kablam! -- The C compiler identification is GNU 5.4.0
Aug 11 17:54:27.867 INFO kablam! -- The CXX compiler identification is GNU 5.4.0
Aug 11 17:54:27.867 INFO kablam! -- Check for working C compiler: /usr/bin/cc
Aug 11 17:54:27.867 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works
Aug 11 17:54:27.867 INFO kablam! -- Detecting C compiler ABI info
Aug 11 17:54:27.867 INFO kablam! -- Detecting C compiler ABI info - done
Aug 11 17:54:27.867 INFO kablam! -- Detecting C compile features
Aug 11 17:54:27.867 INFO kablam! -- Detecting C compile features - done
Aug 11 17:54:27.867 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++
Aug 11 17:54:27.867 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works
Aug 11 17:54:27.867 INFO kablam! -- Detecting CXX compiler ABI info
Aug 11 17:54:27.867 INFO kablam! -- Detecting CXX compiler ABI info - done
Aug 11 17:54:27.867 INFO kablam! -- Detecting CXX compile features
Aug 11 17:54:27.867 INFO kablam! -- Detecting CXX compile features - done
Aug 11 17:54:27.867 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11
Aug 11 17:54:27.867 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11 - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X
Aug 11 17:54:27.868 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wall
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wall - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo - Failed
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override - Success
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override - Failed
Aug 11 17:54:27.868 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression
Aug 11 17:54:27.869 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99 - Success
Aug 11 17:54:27.869 INFO kablam! -- Found NetCDF: /usr/lib/x86_64-linux-gnu/libnetcdf.so  
Aug 11 17:54:27.869 INFO kablam! -- Found NetCDF library. Consider activating the associated format with -DENABLE_NETCDF=ON
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR
Aug 11 17:54:27.869 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
Aug 11 17:54:27.869 INFO kablam! -- Configuring incomplete, errors occurred!
Aug 11 17:54:27.869 INFO kablam! See also "/target/debug/build/chemfiles-sys-1287f83ca0d4e800/out/build/CMakeFiles/CMakeOutput.log".
Aug 11 17:54:27.869 INFO kablam! See also "/target/debug/build/chemfiles-sys-1287f83ca0d4e800/out/build/CMakeFiles/CMakeError.log".
Aug 11 17:54:27.869 INFO kablam! 
Aug 11 17:54:27.869 INFO kablam! --- stderr
Aug 11 17:54:27.869 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/exports.hpp.tmp
Aug 11 17:54:27.869 INFO kablam! CMake Error: : System Error: Read-only file system
Aug 11 17:54:27.869 INFO kablam! CMake Error at /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:362 (configure_file):
Aug 11 17:54:27.869 INFO kablam!   configure_file Problem configuring file
Aug 11 17:54:27.869 INFO kablam! Call Stack (most recent call first):
Aug 11 17:54:27.869 INFO kablam!   /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:378 (_do_generate_export_header)
Aug 11 17:54:27.869 INFO kablam!   chemfiles/CMakeLists.txt:71 (generate_export_header)
Aug 11 17:54:27.869 INFO kablam! 
Aug 11 17:54:27.869 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/config.hpp.tmp
Aug 11 17:54:27.870 INFO kablam! CMake Error: : System Error: Read-only file system
Aug 11 17:54:27.870 INFO kablam! CMake Error at chemfiles/CMakeLists.txt:77 (configure_file):
Aug 11 17:54:27.870 INFO kablam!   configure_file Problem configuring file
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam! CMake Warning (dev) in CMakeLists.txt:
Aug 11 17:54:27.870 INFO kablam!   No cmake_minimum_required command is present.  A line of code such as
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam!     cmake_minimum_required(VERSION 3.5)
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam!   should be added at the top of the file.  The version specified may be lower
Aug 11 17:54:27.870 INFO kablam!   if you wish to support older CMake versions for this project.  For more
Aug 11 17:54:27.870 INFO kablam!   information run "cmake --help-policy CMP0000".
Aug 11 17:54:27.870 INFO kablam! This warning is for project developers.  Use -Wno-dev to suppress it.
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam! thread 'main' panicked at '
Aug 11 17:54:27.870 INFO kablam! command did not execute successfully, got: exit code: 1
Aug 11 17:54:27.870 INFO kablam! 
Aug 11 17:54:27.870 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.32/src/lib.rs:685:5
Aug 11 17:54:27.870 INFO kablam! stack backtrace:
Aug 11 17:54:27.870 INFO kablam!    0:     0x55baf575ec9e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h72fea86a8d8797cb
Aug 11 17:54:27.870 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Aug 11 17:54:27.870 INFO kablam!    1:     0x55baf5754556 - std::sys_common::backtrace::print::h18c103247e00293e
Aug 11 17:54:27.870 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Aug 11 17:54:27.870 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Aug 11 17:54:27.870 INFO kablam!    2:     0x55baf5750b3d - std::panicking::default_hook::{{closure}}::h3ad4677b789cfc8f
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:211
Aug 11 17:54:27.870 INFO kablam!    3:     0x55baf57508b0 - std::panicking::default_hook::h051a84cdda22d0e9
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:227
Aug 11 17:54:27.870 INFO kablam!    4:     0x55baf575114c - std::panicking::rust_panic_with_hook::h3c6af9682333009d
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:475
Aug 11 17:54:27.870 INFO kablam!    5:     0x55baf5750d49 - std::panicking::continue_panic_fmt::hbb7df46bc1faae93
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:390
Aug 11 17:54:27.870 INFO kablam!    6:     0x55baf5750cad - std::panicking::begin_panic_fmt::h854da4b0619aabf7
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:345
Aug 11 17:54:27.870 INFO kablam!    7:     0x55baf56f3341 - cmake::fail::h1a85d3b2fd5bf229
Aug 11 17:54:27.870 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.32/src/lib.rs:685
Aug 11 17:54:27.870 INFO kablam!    8:     0x55baf56f2c80 - cmake::run::h4c9ffe3169c21a39
Aug 11 17:54:27.870 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.32/src/lib.rs:666
Aug 11 17:54:27.870 INFO kablam!    9:     0x55baf56eef88 - cmake::Config::build::h3cce49a17ae5c051
Aug 11 17:54:27.870 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.32/src/lib.rs:521
Aug 11 17:54:27.870 INFO kablam!   10:     0x55baf56eb1c5 - build_script_build::main::h68e7e9154c02358c
Aug 11 17:54:27.870 INFO kablam!                                at /source/build.rs:18
Aug 11 17:54:27.870 INFO kablam!   11:     0x55baf56ec17f - std::rt::lang_start::{{closure}}::hb8e5832896dea6f5
Aug 11 17:54:27.870 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Aug 11 17:54:27.870 INFO kablam!   12:     0x55baf5750be2 - std::panicking::try::do_call::h713e323c3e2f245d
Aug 11 17:54:27.870 INFO kablam!                                at libstd/rt.rs:59
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:310
Aug 11 17:54:27.870 INFO kablam!   13:     0x55baf5771459 - __rust_maybe_catch_panic
Aug 11 17:54:27.870 INFO kablam!                                at libpanic_unwind/lib.rs:105
Aug 11 17:54:27.870 INFO kablam!   14:     0x55baf5759e25 - std::rt::lang_start_internal::hc2204b482a71dd4a
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panicking.rs:289
Aug 11 17:54:27.870 INFO kablam!                                at libstd/panic.rs:392
Aug 11 17:54:27.870 INFO kablam!                                at libstd/rt.rs:58
Aug 11 17:54:27.870 INFO kablam!   15:     0x55baf56ec157 - std::rt::lang_start::he33663eb096abe89
Aug 11 17:54:27.871 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Aug 11 17:54:27.871 INFO kablam!   16:     0x55baf56ebb09 - main
Aug 11 17:54:27.871 INFO kablam!   17:     0x7f11d497682f - __libc_start_main
Aug 11 17:54:27.871 INFO kablam!   18:     0x55baf56ea7c8 - _start
Aug 11 17:54:27.871 INFO kablam!   19:                0x0 - <unknown>
Aug 11 17:54:27.871 INFO kablam! 
Aug 11 17:54:27.871 INFO kablam! su: No module specific data is present
Aug 11 17:54:28.706 INFO running `"docker" "rm" "-f" "934cec7397ddedc6fcb0136e6b89a47ce1558a01d6a121785d0e74137b29030a"`
Aug 11 17:54:28.803 INFO blam! 934cec7397ddedc6fcb0136e6b89a47ce1558a01d6a121785d0e74137b29030a